Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs71429042 chr14:74625274 C/T 2.8E-10 176 25.4 27.27 7.4 KM Plot
PCPG rs71430338 chr2:242528640 G/A 5.87E-5 173 25.87 29.57 20.2 KM Plot
PCPG rs71430376 chr2:242597554 A/G 1.15E-10 170 25.4 19.75 10.3 KM Plot
PCPG rs71439112 chr2:24310967 T/C 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs71439113 chr2:24310979 C/T 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs71439115 chr2:24340461 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs71449181 chr14:74658789 AC/A 1.82E-5 178 25.4 27.75 10.3 KM Plot
PCPG rs71460951 chr14:74529511 GA/G 0.000237 174 25.28 27.43 10.43 KM Plot
PCPG rs71465883 chr12:113579086 G/T 0.000268 171 25.17 25.02 39.12 KM Plot
PCPG rs71558287 chr6:157167285 T/TTTTG 0.000238 177 25.17 23.42 43 KM Plot
PCPG rs71617204 chr3:53042951 G/A 6.09E-6 177 25.28 26.57 11.78 KM Plot
PCPG rs71644616 chr1:40503970 T/G 2.63E-6 174 24.85 24.88 37.18 KM Plot
PCPG rs71644617 chr1:40511267 G/A 3.3E-6 170 25 25.53 37.18 KM Plot
PCPG rs71644619 chr1:40518103 G/A 0.000336 175 25 27.27 25.17 KM Plot
PCPG rs71708200 chr16:90112506 TCAA/T 9.89E-9 174 25.87 20.2 6.62 KM Plot